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BANKSY unifies cell typing and tissue domain segmentation for …
Feb 27, 2024 · We present Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY), an algorithm that unifies these two spatial clustering problems by embedding cells …
BANKSY: scalable cell typing and domain segmentation for …
May 15, 2024 · To address this challenge, we developed BANKSY (building aggregates with a neighbourhood kernel and spatial yardstick) 3, a machine learning tool that incorporates …
BANKSY unifies cell typing and tissue domain segmentation for …
BANKSY is an algorithm with R and Python implementations that identifies both cell types and tissue domains from spatially resolved omics data by incorporating spatial kernels capturing …
GitHub - prabhakarlab/Banksy_py
- Vipul Singhal*, Nigel Chou*, Joseph Lee, Yifei Yue, Jinyue Liu, Wan Kee Chock, Li Lin, YunChing Chang, Erica Teo, Hwee Kuan Lee, Kok Hao Chen# and Shyam Prabhakar#
prabhakarlab/Banksy: BANKSY: spatial clustering
BANKSY is a method for clustering spatial omics data by augmenting the features of each cell with both an average of the features of its spatial neighbors along with neighborhood feature gradients. By incorporating neighborhood information for …
BANKSY - 13. Genome Institute of Singapore (GIS)
Apr 14, 2022 · BANKSY is a spatial omics clustering algorithm that unifies spatial cell type clustering and domain segmentation into a single scalable framework. It does this by utilizing …
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BANKSY unifies cell typing and tissue domain segmentation for …
BANKSY revealed unexpected niche-dependent cell states in the mouse brain and outperformed competing methods on domain segmentation and cell typing benchmarks. BANKSY can also …
highly versatile, with its utility extending beyond cell typing and domain segmentation. We demonstrated spatially aware batch cor-rection by applying the existing batch correction tool …
BANKSY unifies cell typing and tissue domain segmentation for …
2 days ago · We present Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY), an algorithm that unifies these two spatial clustering problems by embedding cells …
Spatial transcriptomic clustering • Banksy - GitHub Pages
BANKSY is a method for clustering spatial omics data by augmenting the features of each cell with both an average of the features of its spatial neighbors along with neighborhood feature …
BANKSY: A Spatial Omics Algorithm that Unifies Cell Type
Apr 15, 2022 · BANKSY’s spatial kernel-based feature augmentation strategy improves per-formance and scalability on both tasks when tested on FISH-based and sequencing-based …
banksy-py 0.0.7 on PyPI - Libraries.io - security & maintenance …
This repository contains the code base and examples for Building Aggregates with a Neighborhood Kernel and Spatial Yardstick developed for: BANKSY: A Spatial Clustering …
Detailed schematic to aid conceptual understanding of BANKSY …
We present Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY), an algorithm that unifies these two spatial clustering problems by embedding cells in a product...
[PDF] BANKSY unifies cell typing and tissue domain …
Feb 27, 2024 · BANKSY revealed unexpected niche-dependent cell states in the mouse brain and outperformed competing methods on domain segmentation and cell typing benchmarks. …
BANKSY: scalable cell typing and domain segmentation for …
May 15, 2024 · We present Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY), an algorithm that unifies these two spatial clustering problems by …
Banksy_py/README.md at main · prabhakarlab/Banksy_py
This repository contains the code base and examples for Building Aggregates with a Neighborhood Kernel and Spatial Yardstick developed for: BANKSY: A Spatial Clustering …
satijalab/seurat: vignettes/visiumhd_analysis_vignette.Rmd
Jan 14, 2025 · In Singhal et al., the authors introduce BANKSY, Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY). BANKSY performs multiple tasks, but …
jleechung/banksy-zenodo: Scripts to reproduce BANKSY …
This is a legacy version that uses a custom BANKSY object (i.e., not the SingleCellExperiment class in the latest version). You can install it using the line: …
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