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GitHub - prabhakarlab/Banksy: BANKSY: spatial clustering
- •improve cell-type assignment in noisy data
- •distinguish subtly different cell-types stratified by microenvironment
- •identify spatial domains sharing the same microenvironment
- Banksy is applicable to a wide array of spatial technologies (e.g. 1… See more
BANKSY unifies cell typing and tissue domain segmentation for …
Feb 27, 2024 · BANKSY is an algorithm with R and Python implementations that identifies both cell types and tissue domains from spatially resolved omics data by incorporating spatial …
Spatial transcriptomic clustering • Banksy - GitHub Pages
BANKSY is a method for clustering spatial omics data by augmenting the features of each cell with both an average of the features of its spatial neighbors along with neighborhood feature …
BANKSY: scalable cell typing and domain segmentation for …
May 15, 2024 · BANKSY encodes the microenvironment of a cell using a pair of spatial kernels: one constructed using the weighted mean of gene expression in each cell’s neighbourhood, …
BANKSY: A Spatial Omics Algorithm that Unifies Cell Type
Apr 15, 2022 · We present BANKSY, an algorithm that unifies cell type clustering and domain segmentation by constructing a product space of cell and neighbourhood transcriptomes, …
BANKSY: scalable cell typing and domain segmentation for spatial omics chnologies are revolution-izing our understanding of cellular organiza-tion and function. The need to …
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BANKSY unifies cell typing and tissue domain segmentation for …
BANKSY is an algorithm with R and Python implementations that identifies both cell types and tissue domains from spatially resolved omics data by incorporating spatial kernels capturing …
seurat-wrappers/docs/banksy.md at master · …
Apr 4, 2024 · In this vignette, we describe how to run BANKSY with Seurat objects. If you use BANKSY in your research, please cite. BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis.
BANKSY unifies cell typing and tissue domain segmentation for …
BANKSY revealed unexpected niche-dependent cell states in the mouse brain and outperformed competing methods on domain segmentation and cell typing benchmarks. BANKSY can also …
BANKSY: scalable cell typing and domain segmentation for …
Nat Rev Genet. 2024 Aug;25 (8):527-528. doi: 10.1038/s41576-024-00743-9. 2 Spatial and Single Cell Systems Domain, Genome Institute of Singapore, Singapore, Republic of Singapore.
BANKSY: A Spatial Omics Algorithm that Unifies Cell Type …
Jul 5, 2022 · BANKSY's spatial kernel-based feature augmentation strategy improves performance on both tasks when tested on diverse FISH- and sequencing-based spatial omics …
Banksy - Bioconductor
Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes the mean …
prabhakarlab/Banksy: Spatial transcriptomic clustering
Jul 31, 2024 · Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes …
Exploring cells’ community ties - A*STAR Research
Dec 20, 2024 · The BANKSY algorithm employs a neighbourhood kernel with a feature augmentation approach to analyse data from various spatial omics technologies, such as RNA …
(PDF) BANKSY: A Spatial Omics Algorithm that Unifies Cell Type ...
Apr 15, 2022 · BANKSY’s spatial kernel-based feature augmentation strategy improves per-formance and scalability on both tasks when tested on FISH-based and sequencing-based …
BANKSY: A Spatial Omics Algorithm that Unifies Cell Type …
We present BANKSY, an algorithm that unifies cell type clustering and domain segmentation by constructing a product space of cell and neighborhood transcriptomes, representing cell state …
BANKSY unifies cell typing and tissue domain segmentation for …
BANKSY revealed unexpected niche-dependent cell states in the mouse brain and outperformed competing methods on domain segmentation and cell typing benchmarks. BANKSY can also …
[PDF] BANKSY: A Spatial Omics Algorithm that Unifies Cell Type ...
BANKSY’s spatial kernel-based feature augmentation strategy improves per-formance and scalability on both tasks when tested on FISH-based and sequencing-based spatial omics …
Faster, More Accurate Spatial Omics: How BANKSY Streamlines …
May 14, 2024 · Finally, personalized medicine using BANKSY technology is now possible. An individual’s spatial omics data would allow clinicians to tailor treatment plans based on the …
[PDF] BANKSY unifies cell typing and tissue domain …
Feb 27, 2024 · BANKSY provides an accurate, biologically motivated, scalable and versatile framework for analyzing spatially resolved omics data, and revealed unexpected niche …
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