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Pathway Commons: A Resource for Biological …
By representing data in BioPAX, Pathway Commons is able to provide a detailed representation of a variety of biological concepts including: Biochemical reactions; gene regulatory networks; and genetic interactions; transport and catalysis …
PathJam - Biological Pathway Integration Tool
PathJam is a public tool which provides an intuitive and user-friendly framework for biological pathway analysis of human gene lists. This server integrates pathway-related annotations from …
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PathVisio biological pathway editor | pathvisio.github.io
PathVisio is a free open-source pathway analysis and drawing software which allows drawing, editing, and analyzing biological pathways. It is developed in Java and can be extended with …
Reactome Pathway Database
Reactome is a free, open-source, curated and peer reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of …
PathBank
A Pathway for Every Protein. A Map for Every Metabolite. PathBank is an interactive, visual database containing more than 600 000 machine-readable pathways found in model …
Home | WikiPathways
WikiPathways is an open science platform for biological pathways contributed, updated, and used by the research community. Interact with diagrams with clickable genes, drugs, and pathways. …
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ESCHER
Escher is a web-based tool for building, viewing, and sharing visualizations of biological pathways. These pathway maps are a great way to contextualize data about metabolism. To get started, load a map by clicking the Load Map button …
Pathway Analysis - Metabolon
This page offers a visualization of biological pathways, providing an intuitive and engaging way to explore the intricate web of metabolic and signaling pathways. Here you can delve deeper into the data, gaining insights into how different …
Free Online Bioinformatics Tools - Bitesize Bio
Oct 7, 2024 · This freely available, searchable database arranges resources by categories and sub-categories such as Structure Databases and Analysis Tools, Proteomics Resources, and Enzymes and Pathways. The OBRC is the largest …
A Web Tool for Generating High Quality Machine-readable …
Feb 8, 2017 · PathWhiz is a comprehensive, online pathway drawing tool for generating biochemical and biological pathways. It uses publicly accessible databases and easily …
Pathguide: the pathway resource list
Pathguide contains information about 702 biological pathway related resources and molecular interaction related resources. Click on a link to go to the resource home page or 'Details' for a …
ShinyGO 0.81 - South Dakota State University
Produce KEGG pathway diagrams with your genes highlighted, hierarchical clustering trees and networks summarizing overlapping terms/pathways, protein-protein interaction networks, gene …
DAVID Functional Annotation Bioinformatics Microarray Analysis
Identify enriched biological themes, particularly GO terms. Discover enriched functional-related gene groups. Cluster redundant annotation terms. Visualize genes on BioCarta & KEGG …
STAGEs: A web-based tool that integrates data visualization and …
May 2, 2023 · Users can directly upload data created from Excel spreadsheets and use STAGEs to render volcano plots, differentially expressed genes stacked bar charts, pathway enrichment …
PathCards - Human Biological Pathway Unification
PathCards is an integrated database of human biological pathways and their annotations. Human pathways were clustered into SuperPaths based on gene content similarity. Each PathCard …
PathVisio 3: An Extendable Pathway Analysis Toolbox
Feb 23, 2015 · PathVisio is a freely available, open-source tool published under the Apache 2.0 license (http://www.apache.org/licenses/LICENSE-2.0). It is implemented in Java and thus …
WebGestalt (WEB-based GEne SeT AnaLysis Toolkit)
WebGestalt: an integrated system for exploring gene sets in various biological contexts. Nucleic Acids Res, 33(Web Server issue), W741-748. Browser support: We strongly recommend using …
Advanced Pathway Analysis | iPathwayGuide by Advaita …
Next-gen pathway analysis using Advaita’s proprietary “Impact Analysis” method to identify significant pathways without all the noise found in other approaches. iPathwayGuide provides …
Pathway Tools Bioinformatics Software - SRI
Analysis of gene-expression, metabolomics, and multi-omics datasets, including pathway analysis and painting omics data onto diagrams of the full metabolic network, full regulatory network, …
A graphical and computational modeling platform for biological …
Mar 15, 2018 · Here, we present a protocol for a biologist-friendly graphical modeling scheme that facilitates the construction of detailed network diagrams, summarizing the components of a …
Identification of ETV5 as a prognostic marker related to ... - Nature
3 days ago · Gene ontology for biological process analysis revealed that these genes were involved in the regulation of ERK and MAPK pathways, gene transcription, cell proliferation …
Heat of reaction in individual metabolic pathways of yeast …
Nov 25, 2024 · Background The yeast Saccharomyces cerevisiae, commonly used in industry, exhibits complex metabolism due to the Crabtree effect, fermenting alcohol even under …
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