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- PathCards: an integrated database of human biological pathways and their annotations1.
- KEGG Pathway database: a popular pathway search database highly used by biologists2.
- WikiPathways: a community curated pathway database using the "wiki" concept23.
- Reactome: a free and manually curated online database of biological pathways2.
- PathBank: a comprehensive, visually rich pathway database containing more than 110 000 machine-readable pathways found in 10 model organisms4.
- BioCyc: a collection of 20,043 Pathway/Genome Databases (PGDBs) for model eukaryotes and for thousands of microbes, plus software tools for exploring them5.
Learn more:✕This summary was generated using AI based on multiple online sources. To view the original source information, use the "Learn more" links.PathCards is an integrated database of human biological pathways and their annotations. Human pathways were clustered into SuperPaths based on gene content similarity. Each PathCard provides information on one SuperPath which represents one or more human pathways. It includes 1626 SuperPath entries, consolidated from 11 sources.pathcards.genecards.org/KEGG Pathway database is a popular pathway search database highly used by biologists. WikiPathways is a community curated pathway database using the "wiki" concept. All pathways have an open license and can be freely used. Reactome is a free and manually curated online database of biological pathways.en.wikipedia.org/wiki/Biological_pathwayWikiPathways is a database of biological pathway models collected and curated by the research community. Anyone at any time can contribute their pathway knowledge using freely available pathway editing tools.academic.oup.com/nar/article/49/D1/D613/5992285PathBank (www.pathbank.org) is a new, comprehensive, visually rich pathway database containing more than 110 000 machine-readable pathways found in 10 model organisms (Homo sapiens, Bos taurus, Rattus norvegicus, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, Saccharomyces cerevisiae, Escherichia coli and Pseudomonas aeruginosa).academic.oup.com/nar/article/48/D1/D470/5585552BioCyc is a collection of 20,043 Pathway/Genome Databases (PGDBs) for model eukaryotes and for thousands of microbes, plus software tools for exploring them. BioCyc is an en cyc lopedic reference that contains curated data from 146,000 publications.www.biocyc.org/KEGG PATHWAY Database - GenomeNet
Oct 1, 2024 · KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge of the molecular interaction, reaction and relation networks for:
Genes
KEGG GENES is a collection of genes and proteins in complete genomes of cellular …
Network
KEGG NETWORK represents a renewed attempt by KEGG to capture knowledge …
Kegg Compound Database
KEGG COMPOUND is one of the four original databases, together with KEGG …
Disease
The KEGG Mapper Search tool with "hsa" mode contains a feature to search …
Orthology (Ko)
Cellular and organism-level functions are stored in the PATHWAY, BRITE and …
Brite
KEGG BRITE is a collection of hierarchical classification systems capturing …
Kegg Objects
KEGG objects are biological entities from molecular to higher levels that are ... C …
Drug
KEGG DRUG is a comprehensive drug information resource for approved drugs …
Find Organism Code
Find organism code: ...
Help
Enter keywords to search pathway maps. This is a search against the relational …
Pathway Commons: A Resource for Biological …
Pathway Commons aims to collect and disseminate biological pathway and interaction data. Data is collected from partner databases and is represented in the BioPAX standard. By representing data in BioPAX, Pathway Commons is …
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BioCyc Pathway/Genome Database Collection
BioCyc is a collection of 20,052 Pathway/Genome Databases (PGDBs) for model eukaryotes and for thousands of microbes, plus software tools for exploring them.
List of biological databases - Wikipedia
35 rows · Reactome: navigable map of human biological pathways, ranging from metabolic …
See all 35 rows on en.wikipedia.orgDB NAME DB WEBSITE PROVIDER InterPro http://www.ebi.ac.uk/interpro/ ELIXIR infrastructure NextProt https://www.nextprot.org/ CALIPHO (is a group at the S… Wiki-pi http://severus.dbmi.pitt.edu/wiki-pi/ Madhavi K. Ganapathiraju SWISS-MODEL Repository Database of annotated 3D prote… University of Basel
PathBank
PathBank is an interactive, visual database containing more than 600 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis …
Home | WikiPathways
WikiPathways is an open science platform for biological pathways contributed, updated, and used by the research community. Interact with diagrams with clickable genes, drugs, and pathways. …
PathCards - Human Biological Pathway Unification
PathCards is an integrated database of human biological pathways and their annotations. Human pathways were clustered into SuperPaths based on gene content similarity. Each PathCard …
KEGG: Kyoto Encyclopedia of Genes and Genomes
KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, …
Reactome - Database Commons - National Genomics Data Center
Jun 16, 2022 · Reactome is a free, open-source, curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation, and …
RaMP: Relational Database of Metabolomics Pathways
Mar 27, 2024 · Identify enriched pathways or chemical classes given an input list of analytes. RaMP (Relational database of Metabolomic Pathways) is a multi-sourced integrated database with comprehensive pathway, chemical, and …
Pathway Commons 2019 Update: integration, analysis and …
Pathway Commons (PC) is a resource that aggregates data from publicly available biological pathway and molecular interaction databases and provides it from a single access point on the …
Pathguide: the pathway resource list
Pathguide contains information about 702 biological pathway related resources and molecular interaction related resources. Click on a link to go to the resource home page or 'Details' for a …
Other Databases - PathBank
Reactome is a curated, peer-reviewed knowledgbase of biological pathways, including metabolic pathways as well as protein_complex trafficking and signaling pathways. Reactome includes …
WikiPathways 2024: next generation pathway database - PMC
WikiPathways (wikipathways.org) is an open-source biological pathway database. Collaboration and open science are pivotal to the success of WikiPathways. Here we highlight the continuing …
Biological Databases for Human Research - PMC - PubMed …
Pathway databases. Pathway databases contain biological pathways for metabolic, signaling, and regulatory pathway analysis. A representative example is KEGG PATHWAY , a curated …
Reactome Pathway Database
Reactome is a free, open-source, curated and peer reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of …
Pathway Commons, a web resource for biological pathway data
Nov 10, 2010 · Pathway Commons (http://www.pathwaycommons.org) is a freely available database that collects, normalizes and integrates publicly available biological pathway and …
WikiPathways: connecting communities - PubMed
Jan 8, 2021 · WikiPathways (https://www.wikipathways.org) is a biological pathway database known for its collaborative nature and open science approaches. With the core idea of the …
Metabolic pathway databases and model repositories
Mar 1, 2018 · Here we present a review of the most popular metabolic pathway databases and model repositories, focusing on their scope, content including reactions, enzymes, …
Introduction to Biological Pathway Databases - Omics tutorials
Aug 5, 2019 · Pathway information is available through a large number of databases ranging from high-quality databases created by professional curators to massive databases, covering a vast …
Validation of the biological function and prognostic significance of ...
4 days ago · The HALLMARK, KEGG, and Reactome pathways were downloaded from the Msigdb database , and the pathways were scored using the R package GSVA (gene set …
PALS1-dependent modulations of mRNA profiles in MDCK II cells …
1 day ago · In addition to the GO-BP enrichment studies, we also included over-representation analyses (ORAs) using REACTOME , and KEGG [37, 38] pathway databases, to confirm …
Decoding the anti-hypertensive mechanism of α-mangostin based …
4 days ago · GO functional enrichment analysis, KEGG pathway analysis, and disease association analysis were conducted using the DAVID database and R package …
Identification of ETV5 as a prognostic marker related to epigenetic ...
1 day ago · Gene ontology for biological process analysis revealed that these genes were involved in the regulation of ERK and MAPK pathways, gene transcription, cell proliferation …
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