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CellChat for systematic analysis of cell–cell communication
Sep 16, 2024 · CellChat is a software package for systematic inference, quantitative analysis and intuitive visualization of cell–cell communication in an easily interpretable way from single-cell...
See results only from nature.comDeciphering cell–cell interactions and communication fro…Cell–cell interactions orchestrate organismal development, homeostasis and single-cell functions. When cells do not properly interact or improperly decode …Inference and analysis of cell-cell communication using …We construct a database of interactions among ligands, receptors and their cofactors that accurately represent known heteromeric molecular complexes. …Comparative analysis of cell–cell communication at singl…Here we introduce single-cell-resolved interaction analysis through binning (Scriabin)—an adaptable and computationally efficient method for CCC analysis.The diversification of methods for studying cell–cell inter…Transcriptomics provides rich information to infer cell–cell interactions and communication, thus accelerating the discovery of the roles of cells within their …Strategies for monitoring cell–cell interactions - NatureHere, we summarize technologies at the interface of chemistry and biology that visualize, map or functionally exploit physically interacting cells through …Deciphering cell–cell interactions and communication from gene ...
Nov 9, 2020 · Cell–cell interactions orchestrate organismal development, homeostasis and single-cell functions. When cells do not properly interact or improperly decode molecular messages, …
- Author: Erick Armingol, Adam Officer, Olivier Harismendy, Nathan E Lewis
- Publish Year: 2021
Evaluation of cell-cell interaction methods by integrating single …
Oct 17, 2022 · We benchmark 16 cell-cell interaction methods by integrating scRNA-seq with ST data. We characterize cell-cell interactions into short-range and long-range interactions using …
- Studies of cell interaction analysis
Inference and analysis of cell-cell communication using CellChat
Feb 17, 2021 · We construct a database of interactions among ligands, receptors and their cofactors that accurately represent known heteromeric molecular complexes. We then develop …
- Author: Suoqin Jin, Christian F. Guerrero-Juarez, Lihua Zhang, Ivan Chang, Raul Ramos, Chen-Hsiang Kuan, Peg...
- Publish Year: 2021
Inference and analysis of cell-cell communication using CellChat
Feb 17, 2021 · We construct a database of interactions among ligands, receptors and their cofactors that accurately represent known heteromeric molecular complexes. We then develop …
- Author: Suoqin Jin, Christian F. Guerrero-Juarez, Lihua Zhang, Ivan Chang, Raul Ramos, Chen-Hsiang Kuan, Peg...
- Publish Year: 2021
Deciphering cell-cell interactions and communication from gene ...
In this Review, we highlight discoveries enabled by analyses of cell-cell interactions from transcriptomic data and review the methods and tools used in this context. Cell-cell …
Profiling signaling mediators for cell-cell interactions …
Microfluidics-driven single-cell interaction analysis tools aspire to establish a secluded environment for two or more isolated cells, fostering single-cell level measurements of intercellular interactions.
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scConnect: a method for exploratory analysis of cell–cell …
May 11, 2021 · We propose a method to predict the putative ligand–receptor interactions between cell types from single-cell RNA-sequencing data. This is achieved by inferring and …
A Comparison of Cell-Cell Interaction Prediction Tools Based on …
Computational prediction of cell-cell interactions (CCIs) is becoming increasingly important for understanding disease development and progression. We present a benchmark study of …
Comprehensive visualization of cell–cell interactions in single-cell ...
Dec 2, 2022 · NICHES is designed for analysis of two types of cellular interactions: cell–cell signaling (defined as the signals passed between cells, determined by the ligand expression of …
Cell2Cell: Explorative Cell Interaction Analysis in Multi-Volumetric ...
Sep 10, 2024 · By analyzing cellular interactions, biomedical experts can gain a more accurate understanding of the intricate relationships between cancer and immune cells. Recent …
Comparative analysis of cell–cell communication at single-cell ...
May 11, 2023 · Here we introduce single-cell-resolved interaction analysis through binning (Scriabin)—an adaptable and computationally efficient method for CCC analysis.
The promising application of cell-cell interaction analysis in cancer ...
Oct 1, 2023 · Cell-cell interactions instruct cell fate and function. These interactions are hijacked to promote cancer development. Single-cell transcriptomics and spatial transcriptomics have …
Ligand-Receptor Interactions for Cell-Cell Communication …
Oct 15, 2024 · Cell-cell communication is a frequently used analysis approach in single cell RNA and spatial transcriptomics, and many tools like CellPhoneDB, CellChat and stLearn have …
The diversification of methods for studying cell–cell interactions …
Jan 18, 2024 · Transcriptomics provides rich information to infer cell–cell interactions and communication, thus accelerating the discovery of the roles of cells within their communities. …
Evaluation of cell-cell interaction methods by integrating single …
Oct 17, 2022 · Our study presents a comprehensive evaluation of cell-cell interaction tools for scRNA-seq. CellChat, CellPhoneDB, NicheNet, and ICELLNET show overall better …
Cell2Cell: Explorative Cell Interaction Analysis in Multi-Volumetric ...
By analyzing cellular interactions, biomedical experts can gain a more accurate understanding of the intricate relationships between cancer and immune cells. Recent methods have focused …
Pairwise Cell Interaction Analysis | Notion
Cell interactions refers to the physical contact of cells in a 2D space. In Enable Medicine insight reports, we typically use this term to refer to pairwise contact analysis—analyzing whether …
Strategies for monitoring cell–cell interactions - Nature
May 25, 2021 · Here, we summarize technologies at the interface of chemistry and biology that visualize, map or functionally exploit physically interacting cells through microscopy, chemical …
Thermal proteome profiling of protein-centric interactions and ...
5 days ago · Thermal proteome profiling (TPP) is a mass spectrometry (MS)-based proteomic technique integrated with cellular thermal shift assay (CETSA) for proteome-wide assessment …
Cell2Cell: Explorative Cell Interaction Analysis in Multi-Volumetric ...
Sep 10, 2024 · By analyzing cellular interactions, biomedical experts can gain a more accurate understanding of the intricate relationships between cancer and immune cells. Recent …
Cas12a-knock-in mice for multiplexed genome editing, disease
2 days ago · LIVE/DEAD Fixable Near-IR Dead Cell Stain (Invitrogen) was included in surface stains to exclude dead cells from analysis. B cell lineage markers include anti-CD19 BV421; …
Examining interactions of animal cells with chloroplasts and their ...
However, the lack of well-established in vitro experimental systems to study chloroplast-animal cell interactions remains a significant challenge. This study investigates the behavior of human …
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