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BANKSY unifies cell typing and tissue domain segmentation for …
Feb 27, 2024 · BANKSY labels spatially structured cell types and subtypes with high accuracy and is adept at distinguishing subtly different cell subtypes residing in distinct microenvironments.
See results only from nature.comBANKSY: scalable cell typin…
We demonstrated spatially aware batch correction by applying the existing batch …
Tools of the trade BANKSY: …
highly versatile, with its utility extending beyond cell typing and domain …
prabhakarlab/Banksy: BANKSY: spatial clustering - GitHub
- •improve cell-type assignment in noisy data
•distinguish subtly different cell-types stratified by microenvironment - •identify spatial domains sharing the same microenvironment
BANKSY is applicable to a wide array of spatial technologies (e.g. 10x Visium, Slide-seq, MERFISH, CosMX, CODEX) and scales well to large datasets. For more details, check out
- •improve cell-type assignment in noisy data
prabhakarlab/Banksy: Spatial transcriptomic clustering
Jul 31, 2024 · Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes …
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BANKSY: scalable cell typing and domain segmentation for
May 15, 2024 · We demonstrated spatially aware batch correction by applying the existing batch correction tool Harmony directly to the embedding produced by BANKSY to integrate 12 …
Banksy - Bioconductor
Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes the mean …
BANKSY unifies cell typing and tissue domain segmentation for …
BANKSY revealed unexpected niche-dependent cell states in the mouse brain and outperformed competing methods on domain segmentation and cell typing benchmarks. BANKSY can also …
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Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes the mean …
Banksy: Spatial transcriptomic clustering
Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes the mean …
highly versatile, with its utility extending beyond cell typing and domain segmentation. We demonstrated spatially aware batch cor-rection by applying the existing batch correction tool …
BANKSY unifies cell typing and tissue domain segmentation for …
2 days ago · BANKSY can also be used for quality control of spatial transcriptomics data and for spatially aware batch effect correction. Importantly, it is substantially faster and more scalable …
satijalab/seurat-wrappers: docs/banksy.Rmd - R Package …
Nov 23, 2024 · Compute a spatially-aware embedding with PCA on the BANKSY matrix, and run Harmony on this embedding.
(PDF) BANKSY: A Spatial Omics Algorithm that Unifies Cell Type ...
Apr 15, 2022 · BANKSY’s spatial kernel-based feature augmentation strategy improves per-formance and scalability on both tasks when tested on FISH-based and sequencing-based …
Banksy-package : The Banksy package - R Package Documentation
Jul 31, 2024 · Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes …
[PDF] BANKSY unifies cell typing and tissue domain …
Feb 27, 2024 · BANKSY provides an accurate, biologically motivated, scalable and versatile framework for analyzing spatially resolved omics data, and revealed unexpected niche …
Tissue module discovery in single-cell-resolution spatial ...
Jun 19, 2024 · For BANKSY, while it identified the upper-layer astrocyte subtypes with a similar spatially distributed pattern as SPACE, it mixed the astrocytes in the deep-layer and in the …
satijalab/seurat-wrappers: docs/banksy.md - R Package …
Nov 23, 2024 · BANKSY is a method that incorporates neighborhood information for clustering spatial omics data. By doing so, BANKSY is able to improve cell-type assignment in noisy data
BANKSY: scalable cell typing and domain segmentation for
May 15, 2024 · BANKSY’s spatial feature augmentation strategy improved performance on both tasks when tested on diverse RNA (imaging, sequencing) and protein (imaging) datasets.
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