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See all on WikipediaProcrustes analysis - Wikipedia
To compare the shapes of two or more objects, the objects must be first optimally "superimposed". Procrustes superimposition (PS) is performed by optimally translating, rotating and uniformly scaling the objects. In other words, both the placement in space and the size of the objects are freely … See more
In statistics, Procrustes analysis is a form of statistical shape analysis used to analyse the distribution of a set of shapes. The name Procrustes (Greek: Προκρούστης) refers to a bandit from Greek mythology who made his … See more
Here we just consider objects made up from a finite number k of points in n dimensions. Often, these points are selected on the … See more
There are many ways of representing the shape of an object. The shape of an object can be considered as a member of an equivalence class formed by taking the set of all sets of k points … See more
GPA applies the Procrustes analysis method to optimally superimpose a set of objects, instead of superimposing them to an arbitrarily selected … See more
Shape analysis is used in biological data to identify the variations of anatomical features characterised by landmark data, for example in … See more
• Extensions to continuum of points and distributions Procrustes Methods, Shape Recognition, Similarity and Docking, by Michel Petitjean. See more
Wikipedia text under CC-BY-SA license Methods of protein structure comparison - PMC - National Center …
WEBCharacterization of protein structure comparison measures on protein structure pair datasets. In this chapter, we present an overview of several superimposition (distance) …
- Author: Irina Kufareva, Ruben Abagyan
- DOI: 10.1007/978-1-61779-588-6_10
- Publish Year: 2012
- Published: 2012
US-align: universal structure alignments of proteins, nucleic acids ...
WEBAug 29, 2022 · We developed the first universal platform, US-align, to uniformly align monomer and complex structures of different macromolecules—proteins, RNAs and …
BioSuper: A web tool for the superimposition of biomolecules and ...
WEBDec 13, 2013 · BioSuper allows for three distinct types of superimpositions, two based on a sequence alignment and one based on a structural alignment. The three …
ZEAL: protein structure alignment based on shape similarity
WEBMar 27, 2021 · Comparison of protein structure through superposition is therefore a powerful complement to sequence alignments in studying evolutionary relatedness between …
A unified approach to sequential and non-sequential structure …
WEBOct 21, 2022 · open access. Highlights. •. US-align2 performs sequential and non-sequential (NS) tertiary structure alignment. •. It achieves 13% higher NS protein …
SuperPose: a simple server for sophisticated structural …
WEBJul 1, 2004 · To deal with all five superposition scenarios, SuperPose employs a combination of four techniques: (i) pairwise or multiple pairwise sequence alignment; (ii) …
Using Dali for Protein Structure Comparison | SpringerLink
WEBFeb 1, 2020 · Distance matrix alignment (Dali) is used routinely by crystallographers worldwide to screen the database of known structures for similarity to newly determined …
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure ...
WEBNov 2, 2019 · iPBAvizu is an implementation of iPBA within the well-known and widely used PyMOL software. iPBAvizu enables to generate iPBA alignments, create and …
Superimposition of protein structures with dynamically ... - Springer
WEBJul 1, 2009 · We show that the superimposition of structures with dRMSD can successfully identify protein domains and protein motions, and that it has important implications in …
Optimum superimposition of protein structures: ambiguities and ...
WEBApr 1, 1996 · The task is to find an optimum geometric alignment of two protein structures. One goal is to maximize the number of pairs of equivalent mainchain atoms and a …
WEBThe task is to find an optimum geometric alignment of two protein structures. One goal is to maximize the number of pairs of equivalent mainchain atoms and a second is to …
Small molecule superposition: A comprehensive ... - Wiley Online …
WEBOct 11, 2022 · PDF. Tools. Share. Abstract. The superposition of small molecules is a standard technique in molecular modeling and for some more advanced in silico …
WEBDec 18, 2023 · This methodology enables GTalign to effectively parallelize all steps, efficiently navigating through an extensive superposition space. Coupled with parallel …
Superpositions and Alignments Tutorial
WEBSuperpositions and Alignments Tutorial. In this tutorial, MatchMaker is used to align protein structures (create a superposition), Match -> Align is used to generate a multiple …
Differences between sliding semi‐landmark methods in geometric ...
WEBMay 26, 2006 · Procrustes superimposition of one landmark and 79 semi-landmarks on 60 molars without semi-landmark alignment (a), and aligned by minimum bending energy …
Superimposing Structures
WEBA multiple sequence alignment can be generated from a set of superimposed structures using Match -> Align . See also: matrixcopy , measure rotation , rmsd , measures of …
three-dimensional superposition of proteins - Bioinformatics
WEBCurrently there are two procedures for protein superposition available in STRAP: Combinatorial Extension (CE) determines an optimal structure alignment between …
Impact of the superimposition methods and the ... - ScienceDirect
WEBEight groups were created based on the core features of each superimposition method: landmark-based alignment (G1); partial area-based alignment (G2); entire tooth area …
A new method assessing predicted and achieved mandibular …
WEBPublished: 11 March 2023. A new method assessing predicted and achieved mandibular tooth movement in adults treated with clear aligners using CBCT and individual crown …
Structure superposition tools - Proteopedia, life in 3D
WEBApr 3, 2024 · Contents. 1 Evaluating Structure Superpositions. 2 Visualizing Structure Superpositions. 3 Conclusions. 3.1 Protein structural superposition. 3.2 DNA structure …
Align - PyMOLWiki
WEBDec 6, 2017 · align performs a sequence alignment followed by a structural superposition, and then carries out zero or more cycles of refinement in order to reject structural …
Accurate global and local 3D alignment of cryo-EM density maps …
WEBFeb 21, 2024 · CryoAlign is a feature-based cryo-EM map alignment tool, in which the employment of feature-based architecture enables the rapid establishment of point pair …
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